Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2941PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_1667 long-chain-fatty-acid--CoA ligase. (573 aa)    
Predicted Functional Partners:
Swoo_1423
KEGG: sse:Ssed_3202 erythronolide synthase; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase.
  
 0.885
Swoo_3176
PFAM: alpha/beta hydrolase fold; KEGG: sdn:Sden_1098 alpha/beta hydrolase fold.
     
  0.800
Swoo_4259
PFAM: PGAP1 family protein; KEGG: sse:Ssed_0705 lipase-like protein.
     
  0.800
Swoo_3925
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rde:RD1_4233 formate dehydrogenase, beta subunit.
    
 
 0.687
Swoo_4587
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_0331 AMP-dependent synthetase and ligase.
 
 
0.655
Swoo_4860
PFAM: AMP-dependent synthetase and ligase; KEGG: spl:Spea_4186 AMP-dependent synthetase and ligase.
 
 
0.644
Swoo_2322
PFAM: AMP-dependent synthetase and ligase; KEGG: sbn:Sbal195_1058 AMP-dependent synthetase and ligase.
  
  
 
0.633
Swoo_2409
PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_1189 long-chain-fatty-acid--CoA ligase.
  
  
 
0.623
Swoo_3995
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_3695 AMP-dependent synthetase and ligase.
  
  
 
0.623
Swoo_2110
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_2523 AMP-dependent synthetase and ligase.
  
  
 
0.622
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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