Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_2952PFAM: protein of unknown function DUF182; KEGG: slo:Shew_2268 protein of unknown function DUF182. (341 aa)    
Predicted Functional Partners:
Swoo_2951
KEGG: pin:Ping_1833 isoquinoline 1-oxidoreductase maturation factor.
 
  
 0.980
Swoo_2949
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: slo:Shew_2265 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
  
 0.961
Swoo_2950
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: sfr:Sfri_1414 (2Fe-2S)-binding domain protein.
 
  
 0.961
Swoo_2953
PFAM: PKD domain containing protein; peptidase M14 carboxypeptidase A; KEGG: hch:HCH_04864 predicted carboxypeptidase.
       0.416
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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