STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2953PFAM: PKD domain containing protein; peptidase M14 carboxypeptidase A; KEGG: hch:HCH_04864 predicted carboxypeptidase. (773 aa)    
Predicted Functional Partners:
Swoo_2719
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: sbl:Sbal_2491 chitinase.
  
     0.546
Swoo_0115
Lysyl endopeptidase; PFAM: PKD domain containing protein; peptidase domain protein; KEGG: hau:Haur_0489 lysyl endopeptidase.
  
     0.539
Swoo_0007
PFAM: Na-Ca exchanger/integrin-beta4; LVIVD repeat protein; KEGG: sdn:Sden_0007 Na-Ca exchanger/integrin-beta4.
  
     0.524
Swoo_1458
KEGG: sdn:Sden_0133 hypothetical protein.
  
     0.489
Swoo_0557
Peptidase M4 thermolysin; PFAM: PKD domain containing protein; peptidase M4 thermolysin; Propeptide PepSY amd peptidase M4; peptidase domain protein; Peptidase M4 thermolysin; KEGG: sdn:Sden_3015 peptidase M4, thermolysin.
  
     0.469
Swoo_4491
KEGG: sdn:Sden_2175 hypothetical protein.
  
     0.449
Swoo_2373
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: sbl:Sbal_3200 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.422
Swoo_2951
KEGG: pin:Ping_1833 isoquinoline 1-oxidoreductase maturation factor.
       0.416
Swoo_2952
PFAM: protein of unknown function DUF182; KEGG: slo:Shew_2268 protein of unknown function DUF182.
       0.416
Swoo_3449
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_3300 microbial collagenase.
  
   
 0.411
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.