STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2971Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_1617 transcriptional regulator, AraC family. (330 aa)    
Predicted Functional Partners:
Swoo_2358
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: smd:Smed_5741 helix-turn-helix-domain containing protein AraC type.
  
     0.697
Swoo_4869
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: slo:Shew_3785 transcriptional regulator, AraC family.
 
 
 0.597
Swoo_2970
PFAM: regulatory protein RecX; KEGG: sse:Ssed_3210 regulatory protein RecX.
       0.580
Swoo_0825
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.
  
     0.546
Swoo_2367
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: hch:HCH_05594 predicted RNA polymerase sigma factor containing a TPR repeat domain.
  
     0.537
Swoo_2969
Hypothetical protein.
       0.532
Swoo_2972
KEGG: sen:SACE_4075 hypothetical protein.
 
     0.460
Swoo_0824
PFAM: DGPFAETKE family protein; KEGG: sit:TM1040_3855 hypothetical protein.
  
     0.445
Swoo_3301
PFAM: regulatory protein LysR; KEGG: sse:Ssed_3183 transcriptional regulator, LysR family.
  
    0.439
Swoo_2093
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbn:Sbal195_3318 transcriptional regulator, AraC family.
  
     0.435
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.