STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2989KEGG: sse:Ssed_3522 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein. (628 aa)    
Predicted Functional Partners:
Swoo_0618
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
 0.803
Swoo_2349
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: vvy:VVA0712 hypothetical protein.
  
    0.788
Swoo_3510
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_3340 diguanylate cyclase/phosphodiesterase.
  
    0.788
Swoo_2555
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_2045 diguanylate cyclase/phosphodiesterase.
  
    0.787
Swoo_2622
PFAM: EAL domain protein; KEGG: sse:Ssed_1968 diguanylate phosphodiesterase.
  
    0.782
Swoo_1051
Diguanylate phosphodiesterase; PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: slo:Shew_0919 diguanylate phosphodiesterase.
  
    0.776
Swoo_4422
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_0539 diguanylate cyclase/phosphodiesterase.
  
  
 0.774
Swoo_0821
PFAM: EAL domain protein; KEGG: shm:Shewmr7_0931 EAL domain protein.
  
     0.763
Swoo_4345
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_0555 diguanylate cyclase/phosphodiesterase.
 
    0.668
Swoo_0471
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_4145 diguanylate cyclase/phosphodiesterase.
 
  
 0.609
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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