Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2990SMART: extracellular solute-binding protein family 3; KEGG: sse:Ssed_3523 extracellular solute-binding protein, family 3. (263 aa)    
Predicted Functional Partners:
Swoo_3985
KEGG: sbm:Shew185_3168 hypothetical protein.
  
     0.762
Swoo_3508
KEGG: sse:Ssed_3338 conserved hypothetical amino acid ABC transporter.
  
     0.753
Swoo_2079
KEGG: sse:Ssed_2551 extracellular solute-binding protein, family 3.
  
     0.744
Swoo_3152
KEGG: slo:Shew_2546 hypothetical protein.
  
     0.691
Swoo_1937
KEGG: sse:Ssed_2682 conserved hypothetical ABC transporter protein.
  
     0.685
Swoo_1309
KEGG: saz:Sama_0941 type IV pilus assembly protein PilM.
  
     0.671
Swoo_1419
KEGG: vco:VC0395_0527 hypothetical protein.
  
     0.643
Swoo_4757
KEGG: sfr:Sfri_0099 hypothetical protein.
  
     0.624
Swoo_4148
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_4005 integral membrane sensor signal transduction histidine kinase.
  
     0.576
Swoo_3196
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sse:Ssed_1479 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.559
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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