STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2995KEGG: cps:CPS_0487 hypothetical protein. (159 aa)    
Predicted Functional Partners:
Swoo_2994
KEGG: cps:CPS_0486 BNR repeat protein.
 
     0.958
Swoo_2993
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0485 TonB-dependent receptor.
 
     0.857
Swoo_0436
KEGG: cps:CPS_4903 hypothetical protein.
  
     0.721
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
 
   0.699
Swoo_1073
KEGG: cps:CPS_3074 cytochrome P460.
  
     0.631
Swoo_1503
PFAM: regulatory protein MarR; KEGG: saz:Sama_2690 transcriptional regulator, MarR family.
  
     0.609
Swoo_3005
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: sse:Ssed_3550 putative suppressor for copper-sensitivity B precursor.
  
 
 0.576
Swoo_3925
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rde:RD1_4233 formate dehydrogenase, beta subunit.
  
   0.547
Swoo_0928
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 0.531
Swoo_2741
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sse:Ssed_1848 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
 0.531
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.