STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2999Gluconate 2-dehydrogenase (acceptor); PFAM: glucose-methanol-choline oxidoreductase; KEGG: sse:Ssed_3542 glucose-methanol-choline oxidoreductase. (561 aa)    
Predicted Functional Partners:
Swoo_3000
KEGG: sse:Ssed_3543 hypothetical protein.
 
 
 0.919
Swoo_3001
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sse:Ssed_3544 hypothetical protein.
  
    0.733
Swoo_2929
KEGG: cps:CPS_3054 tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.726
Swoo_0967
PFAM: WD-40 repeat protein; KEGG: sse:Ssed_0917 WD-40 repeat protein.
    
 0.539
Swoo_4022
KEGG: sfr:Sfri_1847 hypothetical protein.
    
 0.539
Swoo_0368
Hypothetical protein; KEGG: sru:SRU_2528 Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.486
Swoo_0365
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cps:CPS_3701 hypothetical protein.
 
     0.456
Swoo_2938
KEGG: cps:CPS_3056 hypothetical protein.
  
     0.449
Swoo_3002
KEGG: sse:Ssed_3546 hypothetical protein.
       0.429
Swoo_0764
PFAM: Ankyrin; KEGG: hch:HCH_04005 FOG: ankyrin repeat.
    
 0.409
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.