STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3013PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: spl:Spea_2584 tRNA/rRNA methyltransferase (SpoU). (177 aa)    
Predicted Functional Partners:
Swoo_3014
PFAM: YfcL protein; KEGG: spl:Spea_2585 YfcL protein.
  
    0.790
Swoo_3015
PFAM: ATP-NAD/AcoX kinase; KEGG: sse:Ssed_1640 hypothetical protein.
 
     0.609
Swoo_3016
PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sse:Ssed_1639 major facilitator superfamily MFS_1.
 
     0.587
Swoo_4489
KEGG: sse:Ssed_0473 hypothetical protein.
   
    0.499
Swoo_1348
KEGG: sse:Ssed_1248 hypothetical protein.
  
     0.452
Swoo_2391
KEGG: sse:Ssed_2233 hypothetical protein.
  
     0.416
Swoo_4433
KEGG: sfr:Sfri_3594 hypothetical protein.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.