STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3016PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sse:Ssed_1639 major facilitator superfamily MFS_1. (389 aa)    
Predicted Functional Partners:
Swoo_3015
PFAM: ATP-NAD/AcoX kinase; KEGG: sse:Ssed_1640 hypothetical protein.
       0.694
Swoo_1436
Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cps:CPS_0979 putative beta-phosphoglucomutase.
  
  
 0.613
Swoo_3013
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: spl:Spea_2584 tRNA/rRNA methyltransferase (SpoU).
 
     0.587
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
     
 0.569
Swoo_3014
PFAM: YfcL protein; KEGG: spl:Spea_2585 YfcL protein.
       0.507
Swoo_1240
PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: sse:Ssed_1145 positive regulator of sigma E, RseC/MucC.
  
     0.426
prmB
protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
       0.408
Swoo_1111
PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3025 hypothetical protein.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.