STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3030KEGG: sse:Ssed_1625 hypothetical protein. (175 aa)    
Predicted Functional Partners:
Swoo_3031
PFAM: von Willebrand factor type A; KEGG: sse:Ssed_1624 von Willebrand factor, type A.
 
    0.950
Swoo_3032
PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1623 tetratricopeptide TPR_2 repeat protein.
 
   
 0.949
Swoo_3029
PFAM: protein of unknown function DUF58; KEGG: sse:Ssed_1626 protein of unknown function DUF58.
 
  
 0.940
Swoo_3033
KEGG: sse:Ssed_1622 hypothetical protein.
 
   
 0.905
Swoo_3028
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sse:Ssed_1627 ATPase associated with various cellular activities, AAA_3.
 
  
 0.868
Swoo_3035
KEGG: sse:Ssed_1620 hypothetical protein.
 
     0.518
Swoo_3783
KEGG: sse:Ssed_3884 hypothetical protein.
  
     0.471
Swoo_3034
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sse:Ssed_1621 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.454
Swoo_3784
KEGG: sse:Ssed_3885 hypothetical protein.
 
   
 0.447
Swoo_3782
KEGG: sse:Ssed_3883 hypothetical protein.
  
     0.431
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.