Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_3032PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1623 tetratricopeptide TPR_2 repeat protein. (650 aa)    
Predicted Functional Partners:
Swoo_3029
PFAM: protein of unknown function DUF58; KEGG: sse:Ssed_1626 protein of unknown function DUF58.
 
    0.975
Swoo_3030
KEGG: sse:Ssed_1625 hypothetical protein.
 
   
 0.956
Swoo_3033
KEGG: sse:Ssed_1622 hypothetical protein.
 
 
 0.955
Swoo_3031
PFAM: von Willebrand factor type A; KEGG: sse:Ssed_1624 von Willebrand factor, type A.
 
     0.954
Swoo_3028
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sse:Ssed_1627 ATPase associated with various cellular activities, AAA_3.
 
     0.931
Swoo_0073
PFAM: glycosyl transferase family 2; KEGG: sdn:Sden_0205 glycosyl transferase, family 2.
  
 
 0.697
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.650
Swoo_3900
PFAM: histone deacetylase superfamily; KEGG: vvy:VV1156 histone deacetylase/AcuC/AphA family protein.
    
  0.590
Swoo_2369
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; KEGG: mxa:MXAN_2316 EF hand domain protein.
    
 0.587
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.556
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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