Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3033KEGG: sse:Ssed_1622 hypothetical protein. (548 aa)    
Predicted Functional Partners:
Swoo_3032
PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1623 tetratricopeptide TPR_2 repeat protein.
 
 
 0.955
Swoo_3029
PFAM: protein of unknown function DUF58; KEGG: sse:Ssed_1626 protein of unknown function DUF58.
 
  
 0.952
Swoo_3030
KEGG: sse:Ssed_1625 hypothetical protein.
 
   
 0.920
Swoo_3031
PFAM: von Willebrand factor type A; KEGG: sse:Ssed_1624 von Willebrand factor, type A.
 
   
 0.917
Swoo_3028
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sse:Ssed_1627 ATPase associated with various cellular activities, AAA_3.
 
  
 0.784
Swoo_3035
KEGG: sse:Ssed_1620 hypothetical protein.
 
     0.678
Swoo_3034
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sse:Ssed_1621 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.646
Swoo_0748
FHA domain containing protein; PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: slo:Shew_0644 FHA domain containing protein.
  
  
 0.494
cmoB
Methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
 
     0.489
Swoo_1079
PFAM: RDD domain containing protein; KEGG: sse:Ssed_1017 RDD domain containing protein.
 
     0.442
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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