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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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co-expression
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gene co-occurrence
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[Homology]
Score
Swoo_3043KEGG: sse:Ssed_1609 malate synthase. (170 aa)    
Predicted Functional Partners:
Swoo_2234
PFAM: isocitrate lyase and phosphorylmutase; KEGG: sse:Ssed_2353 isocitrate lyase and phosphorylmutase.
 
 
 0.910
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
 
     0.694
Swoo_2887
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.673
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate.
   
 0.623
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
  
 
 0.588
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
  
 0.581
Swoo_4712
Stearoyl-CoA 9-desaturase; PFAM: fatty acid desaturase; KEGG: sse:Ssed_4340 stearoyl-CoA 9-desaturase.
      
 0.580
Swoo_4423
PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: slo:Shew_0383 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)).
    
 0.538
Swoo_3853
KEGG: sdn:Sden_3426 hypothetical protein.
   
 
 0.529
Swoo_2714
PFAM: FAD linked oxidase domain protein; KEGG: sse:Ssed_1872 D-lactate dehydrogenase (cytochrome).
  
  
 0.461
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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