Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3044Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family. (513 aa)    
Predicted Functional Partners:
Swoo_1653
PFAM: lipopolysaccharide biosynthesis protein; KEGG: slo:Shew_1400 lipopolysaccharide biosynthesis protein.
  
     0.699
Swoo_3043
KEGG: sse:Ssed_1609 malate synthase.
 
     0.694
Swoo_2222
KEGG: sse:Ssed_2376 transposase and inactivated derivative.
 
     0.693
Swoo_0779
KEGG: sse:Ssed_3804 hypothetical protein.
  
     0.655
Swoo_4045
KEGG: sde:Sde_0627 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with PAS/PAC sensor(s).
  
     0.646
Swoo_4042
KEGG: sde:Sde_0624 hypothetical protein.
  
     0.629
Swoo_4374
PFAM: Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: pin:Ping_0555 carbohydrate-binding CenC domain protein.
  
     0.621
Swoo_1707
KEGG: spl:Spea_1438 conserved hypothetical protein.
 
     0.607
Swoo_1651
PFAM: polysaccharide export protein; KEGG: spl:Spea_1395 polysaccharide export protein.
  
    0.605
Swoo_4589
PFAM: TPR repeat-containing protein; KEGG: sbl:Sbal_0349 tetratricopeptide TPR_2 repeat protein.
  
     0.603
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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