Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3055KEGG: sse:Ssed_1593 hypothetical protein. (148 aa)    
Predicted Functional Partners:
Swoo_4344
KEGG: sse:Ssed_0608 hypothetical protein.
  
     0.557
Swoo_3056
PFAM: protein of unknown function DUF45; KEGG: spl:Spea_2626 protein of unknown function DUF45.
       0.552
Swoo_3090
KEGG: slo:Shew_2488 hypothetical protein.
  
     0.542
Swoo_3054
PFAM: YHS domain protein; KEGG: amr:AM1_3134 hypothetical protein.
       0.508
Swoo_4433
KEGG: sfr:Sfri_3594 hypothetical protein.
  
     0.505
Swoo_2391
KEGG: sse:Ssed_2233 hypothetical protein.
  
     0.487
Swoo_3746
PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: bcz:BCZK2699 conserved hypothetical protein; possible polyketide synthesis domain protein.
  
     0.454
Swoo_4053
KEGG: mmw:Mmwyl1_1485 putative transcriptional regulator, Fis family protein.
  
     0.454
Swoo_3672
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sse:Ssed_3448 hypothetical protein.
  
     0.409
Swoo_2326
PFAM: Domain of unknown function DUF1904; KEGG: sse:Ssed_2289 hypothetical protein.
   
    0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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