Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3068PFAM: protein of unknown function DUF1260; KEGG: sse:Ssed_1582 protein of unknown function DUF1260. (128 aa)    
Predicted Functional Partners:
Swoo_3067
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: sse:Ssed_1583 hypothetical protein.
 
     0.727
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.717
Swoo_4508
KEGG: sse:Ssed_0462 hypothetical protein.
  
     0.714
Swoo_3069
KEGG: sse:Ssed_1581 RNA-binding S4 domain protein.
       0.707
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.705
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
  
     0.645
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
     0.641
Swoo_4152
PFAM: porin Gram-negative type; KEGG: slo:Shew_3260 porin, gram-negative type.
  
     0.621
Swoo_4926
KEGG: sse:Ssed_4507 hypothetical protein.
  
     0.620
Swoo_3454
PFAM: porin Gram-negative type; KEGG: slo:Shew_2750 porin, gram-negative type.
  
     0.610
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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