Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_3071PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sse:Ssed_1579 PpiC-type peptidyl-prolyl cis-trans isomerase. (92 aa)    
Predicted Functional Partners:
Swoo_2630
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sse:Ssed_1958 putative peptidyl-prolyl cis-trans isomerase, PpiC-type.
  
     0.729
Swoo_3070
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_1580 GCN5-related N-acetyltransferase.
       0.709
Swoo_3069
KEGG: sse:Ssed_1581 RNA-binding S4 domain protein.
       0.523
Swoo_3072
PFAM: protein of unknown function DUF885; KEGG: sse:Ssed_1578 protein of unknown function DUF885.
       0.480
Swoo_3068
PFAM: protein of unknown function DUF1260; KEGG: sse:Ssed_1582 protein of unknown function DUF1260.
       0.477
bamB
Outer membrane assembly lipoprotein YfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.419
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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