STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3072PFAM: protein of unknown function DUF885; KEGG: sse:Ssed_1578 protein of unknown function DUF885. (616 aa)    
Predicted Functional Partners:
Swoo_3073
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_1577 diguanylate cyclase.
       0.537
Swoo_3083
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1252 TonB-dependent receptor.
  
     0.520
Swoo_3071
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sse:Ssed_1579 PpiC-type peptidyl-prolyl cis-trans isomerase.
       0.480
Swoo_3082
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2427 TonB-dependent receptor, plug.
  
     0.480
Swoo_1784
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2861 TonB-dependent receptor.
  
     0.477
Swoo_3070
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_1580 GCN5-related N-acetyltransferase.
       0.445
Swoo_1426
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3760 TonB-dependent receptor.
  
     0.432
Swoo_1186
PFAM: amidohydrolase; KEGG: hne:HNE_0404 amidohydrolase family protein.
 
     0.425
Swoo_2875
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_1716 TonB-dependent receptor, plug.
  
     0.424
Swoo_2747
PFAM: peptidase M28; KEGG: sse:Ssed_1839 peptidase M28.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.