STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3074SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1576 tetratricopeptide domain protein. (419 aa)    
Predicted Functional Partners:
Swoo_3075
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
    0.953
Swoo_3077
PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_2476 MotA/TolQ/ExbB proton channel.
 
    0.951
Swoo_3079
KEGG: slo:Shew_2478 hypothetical protein.
 
     0.940
Swoo_3078
PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_2477 MotA/TolQ/ExbB proton channel.
 
    0.939
Swoo_3076
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: slo:Shew_2475 biopolymer transport protein ExbD/TolR.
 
    0.886
Swoo_0245
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
    0.761
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.758
Swoo_3481
TIGRFAM: TonB family protein; KEGG: sse:Ssed_3332 TonB family protein.
  
     0.757
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.734
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
     0.733
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.