Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3083PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1252 TonB-dependent receptor. (912 aa)    
Predicted Functional Partners:
Swoo_0213
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_0989 TonB-dependent receptor.
  
     0.747
Swoo_0230
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3904 TonB-dependent receptor.
  
     0.728
Swoo_4039
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_4358 TonB-dependent receptor.
  
     0.706
Swoo_2108
KEGG: spl:Spea_2450 conserved hypothetical protein.
  
     0.679
Swoo_4114
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3466 TonB-dependent receptor.
  
     0.674
Swoo_4030
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1722 TonB-dependent receptor.
  
     0.660
Swoo_2921
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1021 TonB-dependent receptor.
  
     0.643
Swoo_2747
PFAM: peptidase M28; KEGG: sse:Ssed_1839 peptidase M28.
  
     0.632
Swoo_2335
KEGG: sse:Ssed_2276 hypothetical protein.
 
     0.631
Swoo_3262
PFAM: protein of unknown function DUF885; KEGG: sbm:Shew185_1465 protein of unknown function DUF885.
  
     0.627
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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