STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3084PFAM: porin Gram-negative type; KEGG: sse:Ssed_2557 porin, gram-negative type. (402 aa)    
Predicted Functional Partners:
Swoo_4350
KEGG: sse:Ssed_0603 hypothetical protein.
  
     0.765
Swoo_3089
KEGG: sse:Ssed_1563 hypothetical protein; Belongs to the UPF0319 family.
 
     0.730
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
  
    0.726
Swoo_0342
PFAM: Sporulation domain protein; KEGG: sse:Ssed_4263 sporulation domain protein.
  
     0.711
Swoo_1063
PFAM: KAP P-loop domain protein; KEGG: pha:PSHAa0207 hypothetical protein.
  
     0.707
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
     0.684
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
   
 0.676
Swoo_0101
PFAM: Paraquat-inducible protein A; KEGG: sse:Ssed_0138 paraquat-inducible protein A.
  
     0.668
Swoo_0887
KEGG: sse:Ssed_0885 hypothetical protein.
  
     0.663
Swoo_0645
PFAM: Curlin associated repeat protein; KEGG: sbn:Sbal195_0876 curlin associated repeat protein.
  
    0.660
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.