STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3087PFAM: protein of unknown function DUF81; KEGG: sse:Ssed_1565 protein of unknown function DUF81. (256 aa)    
Predicted Functional Partners:
dinG
Helicase c2; DNA-dependent ATPase and 5'-3' DNA helicase.
 
    0.817
Swoo_3088
KEGG: sse:Ssed_1564 primosomal replication protein N'', putative.
       0.785
Swoo_3089
KEGG: sse:Ssed_1563 hypothetical protein; Belongs to the UPF0319 family.
       0.773
Swoo_3085
PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: sse:Ssed_1567 DNA polymerase B region.
       0.547
Swoo_3090
KEGG: slo:Shew_2488 hypothetical protein.
       0.434
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.