Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3090KEGG: slo:Shew_2488 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Swoo_1588
KEGG: sse:Ssed_3096 hypothetical protein.
  
     0.690
Swoo_2606
KEGG: sse:Ssed_1994 hypothetical protein.
  
     0.650
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.635
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.632
Swoo_1642
PFAM: CheW domain protein; KEGG: sse:Ssed_3042 CheW protein.
  
     0.621
Swoo_4196
KEGG: sse:Ssed_0773 hypothetical protein.
  
     0.619
Swoo_1591
PFAM: protein of unknown function DUF400; KEGG: sse:Ssed_3093 protein of unknown function DUF400.
  
     0.613
Swoo_3294
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_3173 GCN5-related N-acetyltransferase.
  
     0.602
Swoo_3511
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_3341 putative signal transduction protein.
  
     0.592
Swoo_2585
KEGG: sse:Ssed_2020 SrpA-related protein.
  
     0.575
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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