Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3096PFAM: conserved hypothetical protein; KEGG: sse:Ssed_1558 hypothetical protein. (365 aa)    
Predicted Functional Partners:
Swoo_3097
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: sse:Ssed_1557 protein of unknown function DUF463, YcjX family protein.
 
  
 0.996
Swoo_3098
TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: sse:Ssed_1556 phage shock protein C, PspC.
     
 0.701
Swoo_3099
TIGRFAM: phage shock protein B; PFAM: shock B family protein; KEGG: sse:Ssed_1555 phage shock B family protein.
     
 0.627
Swoo_3100
TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: slo:Shew_2496 phage shock protein A, PspA.
     
 0.587
Swoo_0560
Peptidase U6 penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.578
Swoo_3095
Methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sse:Ssed_1559 methionine gamma-lyase.
       0.562
Swoo_1797
PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.
   
    0.505
Swoo_3356
PFAM: protein of unknown function DUF416; KEGG: sse:Ssed_1284 protein of unknown function DUF416.
  
     0.451
Swoo_0969
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0928 uncharacterized conserved protein UCP006287; Belongs to the UPF0231 family.
  
     0.437
Swoo_1717
Transcriptional regulator, TyrR; PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sse:Ssed_2928 transcriptional regulator, TyrR.
     
 0.436
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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