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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3101KEGG: sse:Ssed_1553 sigma54 specific transcriptional regulator, fis family; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase. (357 aa)    
Predicted Functional Partners:
Swoo_4240
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.800
Swoo_3100
TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: slo:Shew_2496 phage shock protein A, PspA.
 
   
 0.748
Swoo_3098
TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: sse:Ssed_1556 phage shock protein C, PspC.
 
     0.693
Swoo_3099
TIGRFAM: phage shock protein B; PFAM: shock B family protein; KEGG: sse:Ssed_1555 phage shock B family protein.
 
     0.661
Swoo_3102
PFAM: extracellular solute-binding protein family 5; KEGG: sse:Ssed_1552 extracellular solute-binding protein, family 5.
       0.559
Swoo_3104
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1550 binding-protein-dependent transport systems inner membrane component.
       0.552
Swoo_3103
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1551 binding-protein-dependent transport systems inner membrane component.
       0.548
Swoo_3105
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sse:Ssed_1549 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
       0.538
Swoo_3106
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1548 ABC transporter related.
       0.538
Swoo_1275
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: sse:Ssed_1180 PAS/PAC sensor hybrid histidine kinase.
 
 
 
 0.514
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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