STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3126TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: sse:Ssed_1524 cytochrome c family protein. (333 aa)    
Predicted Functional Partners:
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
 
 
 0.997
Swoo_3125
KEGG: spl:Spea_2698 decaheme cytochrome c.
   
 
 0.979
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
 
 
 0.848
Swoo_0195
PFAM: NapC/NirT cytochrome c domain protein; KEGG: spl:Spea_3983 NapC/NirT cytochrome c domain protein.
  
   
 0.759
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
 
     0.742
nrfA
Formate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
 
 0.674
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
 
     0.670
Swoo_3776
KEGG: sse:Ssed_3877 succinate dehydrogenase; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
      
 0.647
Swoo_0182
TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_0202 aromatic amino acid transporter.
      
 0.638
Swoo_0240
KEGG: spl:Spea_3967 formate-dependent nitrite reductase.
 
 
0.566
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.