STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3129Peptidase M4 thermolysin; Extracellular zinc metalloprotease. (499 aa)    
Predicted Functional Partners:
Swoo_4827
TIGRFAM: M6 family metalloprotease domain protein; PFAM: PKD domain containing protein; peptidase M6 immune inhibitor A; KEGG: sse:Ssed_4432 peptidase M6, immune inhibitor A.
 
  
 0.736
Swoo_0042
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_0039 microbial collagenase.
  
  
 0.652
Swoo_3879
PFAM: chitin-binding domain 3 protein; KEGG: son:SO_1072 chitin-binding protein, putative.
  
  
 0.652
Swoo_3449
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_3300 microbial collagenase.
  
  
 0.649
Swoo_2719
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: sbl:Sbal_2491 chitinase.
 
  
 0.630
Swoo_0427
PFAM: peptidase domain protein; KEGG: pha:PSHAa2649 serine protease precursor.
 
   
 0.618
Swoo_4623
PFAM: peptidase domain protein; KEGG: hch:HCH_03665 predicted phosphohydrolase.
 
    0.613
Swoo_1101
Chitinase; PFAM: glycoside hydrolase family 19; Carbohydrate-binding family V/XII; KEGG: aha:AHA_0979 basic endochitinase.
 
  
 0.601
Swoo_1100
PFAM: PKD domain containing protein; glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Chitinase A domain protein; SMART: chitinase II; KEGG: sbl:Sbal_3083 chitinase.
 
    0.511
Swoo_0648
Microbial collagenase; PFAM: peptidase domain protein; Peptidase M9A collagenase domain protein; Peptidase M9 domain; KEGG: son:SO_0639 collagenase family.
  
  
 0.486
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.