STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3133PFAM: Gluconate transporter; Citrate transporter; KEGG: sse:Ssed_2778 gluconate transporter. (452 aa)    
Predicted Functional Partners:
Swoo_3134
PFAM: glycerate kinase; KEGG: sse:Ssed_2779 glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.844
Swoo_3130
Transcriptional regulator, CdaR; PFAM: sugar diacid recognition domain protein; KEGG: sse:Ssed_1518 transcriptional regulator, CdaR.
 
   
 0.586
Swoo_3745
PFAM: carbohydrate kinase FGGY; KEGG: tdn:Tmden_1477 carbohydrate kinase, FGGY.
 
  
 0.562
Swoo_0364
PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_1706 conserved hypothetical protein-signal peptide and transmembrane prediction.
  
  
 0.469
Swoo_1174
KEGG: spl:Spea_0980 hypothetical protein.
  
     0.440
Swoo_4357
PFAM: carbohydrate kinase FGGY; KEGG: sse:Ssed_0596 sugar (pentulose and hexulose) kinase.
  
  
 0.416
Swoo_3132
Lytic transglycosylase catalytic; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.407
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: sse:Ssed_2548 phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family.
      
 0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.