STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3136PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB0988 hypothetical protein. (200 aa)    
Predicted Functional Partners:
Swoo_3137
PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: chu:CHU_2470 hypothetical protein.
       0.636
Swoo_0586
KEGG: vfi:VFA0164 L-lysine 6-monooxygenase.
  
  
 0.479
Swoo_4301
KEGG: rfr:Rfer_0177 hypothetical protein.
  
    0.479
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.448
Swoo_2790
KEGG: sse:Ssed_1803 hypothetical protein.
  
     0.437
Swoo_4436
KEGG: sfr:Sfri_3100 hypothetical protein.
  
     0.437
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.