STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3140PFAM: branched-chain amino acid transport; KEGG: shm:Shewmr7_2596 branched-chain amino acid transport. (100 aa)    
Predicted Functional Partners:
Swoo_3139
PFAM: AzlC family protein; KEGG: slo:Shew_2538 AzlC family protein.
 
  
 0.982
Swoo_3141
PFAM: NIPSNAP family containing protein; KEGG: slo:Shew_2540 NIPSNAP family containing protein.
       0.742
Swoo_3138
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sbn:Sbal195_1599 transcriptional regulator, AraC family.
 
     0.719
Swoo_3550
PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: son:SO_1215 outer membrane protein OmpK, putative.
  
     0.708
Swoo_4007
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: spl:Spea_3330 biopolymer transport protein ExbD/TolR.
  
     0.689
Swoo_4297
KEGG: shm:Shewmr7_0124 hypothetical protein; Belongs to the BI1 family.
  
     0.528
zapB
Protein of unknown function DUF904; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
     0.490
Swoo_1574
KEGG: sse:Ssed_3108 hypothetical protein.
  
     0.481
Swoo_2062
KEGG: sse:Ssed_2604 hypothetical protein.
  
     0.475
Swoo_3298
KEGG: sse:Ssed_3177 hypothetical protein.
  
     0.460
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.