STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3141PFAM: NIPSNAP family containing protein; KEGG: slo:Shew_2540 NIPSNAP family containing protein. (113 aa)    
Predicted Functional Partners:
Swoo_3139
PFAM: AzlC family protein; KEGG: slo:Shew_2538 AzlC family protein.
       0.742
Swoo_3140
PFAM: branched-chain amino acid transport; KEGG: shm:Shewmr7_2596 branched-chain amino acid transport.
       0.742
Swoo_3138
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sbn:Sbal195_1599 transcriptional regulator, AraC family.
 
     0.576
Swoo_3147
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: hch:HCH_03913 chorismate mutase, putative.
  
     0.423
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.