STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3148KEGG: sbn:Sbal195_3954 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
  
     0.525
Swoo_3423
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_3272 major facilitator superfamily MFS_1.
  
     0.442
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.441
Swoo_0342
PFAM: Sporulation domain protein; KEGG: sse:Ssed_4263 sporulation domain protein.
  
     0.433
Swoo_0551
KEGG: sse:Ssed_4086 hypothetical protein.
  
     0.416
Swoo_3444
KEGG: spl:Spea_1582 conserved hypothetical protein.
  
     0.406
Swoo_1575
KEGG: sse:Ssed_3107 protein of unknown function DUF115.
  
     0.400
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.