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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3149KEGG: spl:Spea_2397 putative serine transporter. (430 aa)    
Predicted Functional Partners:
Swoo_0182
TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_0202 aromatic amino acid transporter.
  
   
 0.541
Swoo_4133
PFAM: Endonuclease I; KEGG: sse:Ssed_3971 deoxyribonuclease I.
  
     0.462
Swoo_1910
Anaerobic c4-dicarboxylate antiporter, Dcu family; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
  
  
 0.439
Swoo_4434
TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_0511 putative tyrosine-specific transport protein.
  
     0.430
Swoo_0864
L-serine dehydratase 1; KEGG: sse:Ssed_0859 L-serine ammonia-lyase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
 0.428
Swoo_3130
Transcriptional regulator, CdaR; PFAM: sugar diacid recognition domain protein; KEGG: sse:Ssed_1518 transcriptional regulator, CdaR.
  
     0.424
Swoo_3878
PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_3938 aromatic amino acid permease.
  
     0.409
Swoo_1321
PFAM: protein of unknown function DUF469; KEGG: slo:Shew_1125 protein of unknown function DUF469.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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