Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3149KEGG: spl:Spea_2397 putative serine transporter. (430 aa)    
Predicted Functional Partners:
Swoo_0182
TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_0202 aromatic amino acid transporter.
  
   
 0.551
Swoo_4133
PFAM: Endonuclease I; KEGG: sse:Ssed_3971 deoxyribonuclease I.
  
     0.462
Swoo_1910
Anaerobic c4-dicarboxylate antiporter, Dcu family; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
  
  
 0.456
Swoo_4434
TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_0511 putative tyrosine-specific transport protein.
  
     0.430
Swoo_3130
Transcriptional regulator, CdaR; PFAM: sugar diacid recognition domain protein; KEGG: sse:Ssed_1518 transcriptional regulator, CdaR.
  
     0.424
kdkA
Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.416
Swoo_3878
PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_3938 aromatic amino acid permease.
  
     0.409
Swoo_1321
PFAM: protein of unknown function DUF469; KEGG: slo:Shew_1125 protein of unknown function DUF469.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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