STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3158PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_1511 alpha/beta hydrolase fold. (297 aa)    
Predicted Functional Partners:
Swoo_3157
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_1512 AMP-dependent synthetase and ligase.
 
 
 0.996
Swoo_3156
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sse:Ssed_1513 steroid dehydrogenase.
 
 
 
 0.962
Swoo_3159
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: sse:Ssed_1510 3-oxoacyl-(acyl-carrier-protein (ACP)) synthase III C terminal domain protein.
 
   
 0.931
Swoo_1423
KEGG: sse:Ssed_3202 erythronolide synthase; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase.
 
 
 0.765
Swoo_1421
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: sse:Ssed_3204 omega-3 polyunsaturated fatty acid synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.726
Swoo_1420
TIGRFAM: PfaD family protein; KEGG: sse:Ssed_3205 2-nitropropane dioxygenase, NPD.
 
    0.667
Swoo_1422
TIGRFAM: PfaB family protein; KEGG: sse:Ssed_3203 omega-3 polyunsaturated fatty acid synthase PfaB.
  
   
 0.643
Swoo_1012
Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.466
Swoo_1537
KEGG: sse:Ssed_1424 NrfJ-related protein.
  
     0.441
Swoo_3784
KEGG: sse:Ssed_3885 hypothetical protein.
    
 
 0.430
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.