Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3169PFAM: amino acid-binding ACT domain protein; KEGG: sse:Ssed_1500 amino acid-binding ACT domain protein. (164 aa)    
Predicted Functional Partners:
Swoo_3623
KEGG: sse:Ssed_3434 glycine cleavage system regulatory protein-like protein.
  
     0.733
Swoo_2176
PFAM: amino acid-binding ACT domain protein; KEGG: sse:Ssed_2431 amino acid-binding ACT domain protein.
  
     0.574
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
 
  
 0.568
Swoo_3168
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1501 binding-protein-dependent transport systems inner membrane component.
       0.531
Swoo_3167
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1502 phosphate ABC transporter, inner membrane subunit PstA.
       0.442
Swoo_3170
KEGG: sse:Ssed_1499 hypothetical protein.
       0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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