STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3172PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO_0183 acetyltransferase, GNAT family. (166 aa)    
Predicted Functional Partners:
Swoo_3173
PFAM: Tail Collar domain protein; KEGG: hau:Haur_4954 tail collar domain protein.
 
     0.917
Swoo_3174
SMART: Dystroglycan-type cadherin domain protein; KEGG: sdn:Sden_3728 cadherin.
 
     0.568
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
 
 
   0.524
Swoo_4269
PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_0737 GCN5-related N-acetyltransferase.
 
     0.471
Swoo_1675
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.