STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3173PFAM: Tail Collar domain protein; KEGG: hau:Haur_4954 tail collar domain protein. (179 aa)    
Predicted Functional Partners:
Swoo_3172
PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO_0183 acetyltransferase, GNAT family.
 
     0.906
Swoo_3174
SMART: Dystroglycan-type cadherin domain protein; KEGG: sdn:Sden_3728 cadherin.
 
     0.673
Swoo_1147
Beta-galactosidase; KEGG: sbl:Sbal_1131 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.
   
   0.511
Swoo_0491
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Cadherin; Na-Ca exchanger/integrin-beta4; KEGG: sbn:Sbal195_4098 outer membrane adhesin like proteiin.
 
 
   0.459
Swoo_4290
KEGG: ccr:CC_0556 hypothetical protein.
  
     0.439
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.