node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Swoo_3190 | rplC | Swoo_3190 | Swoo_4690 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.722 |
Swoo_3190 | rplM | Swoo_3190 | Swoo_4222 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.723 |
Swoo_3190 | rplP | Swoo_3190 | Swoo_4683 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.713 |
Swoo_3190 | rplT | Swoo_3190 | Swoo_2488 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.716 |
Swoo_3190 | rplU | Swoo_3190 | Swoo_1004 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.737 |
Swoo_3190 | rpmA | Swoo_3190 | Swoo_1005 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | PFAM: ribosomal protein L27; KEGG: shm:Shewmr7_3124 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.713 |
Swoo_3190 | rpmH | Swoo_3190 | Swoo_4932 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | PFAM: ribosomal protein L34; KEGG: shw:Sputw3181_4095 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.714 |
Swoo_3190 | rpsC | Swoo_3190 | Swoo_4684 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.725 |
Swoo_3190 | rpsG | Swoo_3190 | Swoo_4694 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.719 |
Swoo_3190 | rpsO | Swoo_3190 | Swoo_3558 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.727 |
rplC | Swoo_3190 | Swoo_4690 | Swoo_3190 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1486 ABC transporter-related protein. | 0.722 |
rplC | rplM | Swoo_4690 | Swoo_4222 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
rplC | rplP | Swoo_4690 | Swoo_4683 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rplT | Swoo_4690 | Swoo_2488 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.986 |
rplC | rplU | Swoo_4690 | Swoo_1004 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.984 |
rplC | rpmA | Swoo_4690 | Swoo_1005 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | PFAM: ribosomal protein L27; KEGG: shm:Shewmr7_3124 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.989 |
rplC | rpmH | Swoo_4690 | Swoo_4932 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | PFAM: ribosomal protein L34; KEGG: shw:Sputw3181_4095 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.921 |
rplC | rpsC | Swoo_4690 | Swoo_4684 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.997 |
rplC | rpsG | Swoo_4690 | Swoo_4694 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.991 |
rplC | rpsO | Swoo_4690 | Swoo_3558 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.989 |