STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3205KEGG: sse:Ssed_1471 hypothetical protein. (143 aa)    
Predicted Functional Partners:
Swoo_2470
PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ppr:PBPRA2462 hypothetical protein.
 
    0.639
metAS
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.
       0.563
Swoo_3206
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sse:Ssed_1470 short-chain dehydrogenase/reductase SDR.
 
     0.560
Swoo_3014
PFAM: YfcL protein; KEGG: spl:Spea_2585 YfcL protein.
  
     0.529
Swoo_0039
PFAM: Peptidoglycan-binding LysM; KEGG: sse:Ssed_0036 peptidoglycan-binding LysM.
   
    0.516
Swoo_2768
PFAM: protein of unknown function DUF991; KEGG: sse:Ssed_1819 protein of unknown function DUF991.
  
     0.497
Swoo_1909
PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sse:Ssed_3630 OmpA domain protein transmembrane region-containing protein.
  
     0.457
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.