STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3208PFAM: protein of unknown function DUF925; KEGG: sse:Ssed_1468 protein of unknown function DUF925. (189 aa)    
Predicted Functional Partners:
Swoo_3209
KEGG: spl:Spea_2790 conserved hypothetical protein.
       0.603
Swoo_3210
acyl-CoA thioesterase II; KEGG: sse:Ssed_1466 palmitoyl-CoA hydrolase; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase.
       0.507
Swoo_1976
KEGG: vvu:VV1_2472 adenylate kinase.
  
     0.419
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.