Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3210acyl-CoA thioesterase II; KEGG: sse:Ssed_1466 palmitoyl-CoA hydrolase; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase. (288 aa)    
Predicted Functional Partners:
fadB
Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 
 
 0.741
Swoo_3209
KEGG: spl:Spea_2790 conserved hypothetical protein.
       0.655
plsB
Glycerol-3-phosphate O-acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: sse:Ssed_0201 glycerol-3-phosphate O-acyltransferase; Belongs to the GPAT/DAPAT family.
 
  
 0.594
Swoo_3211
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sse:Ssed_1465 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.569
Swoo_2887
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
      
 0.560
Swoo_3208
PFAM: protein of unknown function DUF925; KEGG: sse:Ssed_1468 protein of unknown function DUF925.
       0.507
Swoo_3026
Fatty acid oxidation complex, alpha subunit FadJ; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.487
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
      
 0.466
Swoo_0371
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sbn:Sbal195_0574 HAD-superfamily hydrolase, subfamily IA, variant 1.
  
  
 0.462
Swoo_4341
PFAM: MaoC domain protein dehydratase; KEGG: sse:Ssed_0611 MaoC domain protein dehydratase.
  
 
 0.413
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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