Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_3216KEGG: spl:Spea_2913 hypothetical protein. (62 aa)    
Predicted Functional Partners:
Swoo_3217
KEGG: spl:Spea_2913 hypothetical protein.
       0.639
Swoo_3215
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sil:SPO2245 hypothetical protein.
       0.563
Swoo_3214
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amr:AM1_6231 glyoxalase family protein.
       0.457
Swoo_4728
TIGRFAM: general secretion pathway protein J; KEGG: slo:Shew_3613 general secretion pathway protein J.
  
 
 0.449
Swoo_0313
TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: sse:Ssed_0425 type IV-A pilus assembly ATPase PilB.
  
   0.429
Swoo_4414
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: sse:Ssed_0547 type II secretion system protein E.
  
   0.429
Swoo_4733
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
   0.429
Swoo_3218
PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease.
       0.421
Swoo_0312
PFAM: type II secretion system protein; KEGG: sbn:Sbal195_4061 type II secretion system protein.
  
    0.419
Swoo_4413
PFAM: type II secretion system protein; KEGG: sse:Ssed_0548 type II secretion system protein.
  
    0.419
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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