STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3237PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: sse:Ssed_1444 histone family protein nucleoid-structuring protein H-NS; Belongs to the histone-like protein H-NS family. (131 aa)    
Predicted Functional Partners:
Swoo_3014
PFAM: YfcL protein; KEGG: spl:Spea_2585 YfcL protein.
  
     0.616
yihI
Protein of unknown function DUF414; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.589
Swoo_4220
KEGG: spl:Spea_3593 conserved hypothetical protein.
  
     0.561
Swoo_3669
PFAM: protein of unknown function DUF413; KEGG: slo:Shew_2898 protein of unknown function DUF413.
  
    0.511
rraB
Protein of unknown function DUF1260; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
  
     0.469
bamC
NlpBDapX family lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
    0.465
Swoo_3238
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sse:Ssed_1443 amidohydrolase.
       0.465
Swoo_3239
KEGG: sse:Ssed_1442 hypothetical protein.
       0.465
slyX
PFAM: SlyX family protein; KEGG: sse:Ssed_0916 SlyX family protein; Belongs to the SlyX family.
  
     0.459
Swoo_2768
PFAM: protein of unknown function DUF991; KEGG: sse:Ssed_1819 protein of unknown function DUF991.
  
     0.432
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.