STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3239KEGG: sse:Ssed_1442 hypothetical protein. (435 aa)    
Predicted Functional Partners:
Swoo_3238
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sse:Ssed_1443 amidohydrolase.
    
0.974
Swoo_0158
PFAM: peptidase M14 carboxypeptidase A; KEGG: sse:Ssed_0178 peptidase M14, carboxypeptidase A.
  
     0.649
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.617
Swoo_0528
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sse:Ssed_4095 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
  
 0.603
Swoo_4831
KEGG: sse:Ssed_4439 hypothetical protein.
  
     0.573
Swoo_4159
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: spl:Spea_3518 peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.570
Swoo_3741
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: slo:Shew_2992 amidohydrolase.
 
     0.554
Swoo_4321
KEGG: sse:Ssed_0628 hypothetical protein.
  
     0.532
Swoo_3465
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sse:Ssed_3317 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.517
Swoo_0637
PFAM: peptidase M28; KEGG: sse:Ssed_4028 peptidase M28.
  
     0.505
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.