Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3240KEGG: spl:Spea_2859 lipoprotein, putative. (127 aa)    
Predicted Functional Partners:
Swoo_3241
PFAM: protein of unknown function UPF0066; KEGG: sse:Ssed_1440 protein of unknown function UPF0066.
       0.765
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.728
Swoo_3242
PFAM: transferase hexapeptide repeat containing protein; KEGG: spl:Spea_2861 transferase hexapeptide repeat containing protein.
       0.693
Swoo_0323
PFAM: Patatin; surface antigen variable number repeat protein; KEGG: sse:Ssed_0435 patatin.
    
 
 0.460
Swoo_0379
KEGG: sse:Ssed_4221 hypothetical protein.
    
 
 0.460
Swoo_0541
KEGG: sse:Ssed_0660 hypothetical protein.
    
 
 0.460
Swoo_4205
KEGG: sse:Ssed_0764 hypothetical protein.
    
 
 0.460
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
    
 
 0.456
Swoo_4106
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3953 ABC transporter-related protein.
    
 
 0.456
Swoo_1281
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
    
 
 0.423
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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