STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3240KEGG: spl:Spea_2859 lipoprotein, putative. (127 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.825
Swoo_3241
PFAM: protein of unknown function UPF0066; KEGG: sse:Ssed_1440 protein of unknown function UPF0066.
       0.733
Swoo_3242
PFAM: transferase hexapeptide repeat containing protein; KEGG: spl:Spea_2861 transferase hexapeptide repeat containing protein.
       0.688
Swoo_0323
PFAM: Patatin; surface antigen variable number repeat protein; KEGG: sse:Ssed_0435 patatin.
    
 
 0.585
Swoo_0379
KEGG: sse:Ssed_4221 hypothetical protein.
    
 
 0.585
Swoo_0541
KEGG: sse:Ssed_0660 hypothetical protein.
    
 
 0.585
Swoo_4205
KEGG: sse:Ssed_0764 hypothetical protein.
    
 
 0.585
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.