Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3252N-acyl-D-amino-acid deacylase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cps:CPS_2691 amidohydrolase family protein. (527 aa)    
Predicted Functional Partners:
Swoo_3253
PFAM: peptidase M14 carboxypeptidase A; KEGG: cps:CPS_2692 zinc carboxypeptidase family protein.
 
     0.855
Swoo_3406
PFAM: Amidohydrolase 3; KEGG: sse:Ssed_3258 amidohydrolase 3.
 
     0.726
Swoo_3254
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1520 TonB-dependent receptor.
 
     0.659
Swoo_3256
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_2699 transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.525
Swoo_3255
PFAM: Na+/H+ antiporter NhaC; KEGG: sru:SRU_1137 Na+/H+ antiporter family.
 
     0.487
Swoo_2836
PFAM: Amidohydrolase 3; KEGG: cps:CPS_2078 hypothetical protein.
 
     0.415
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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