Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3255PFAM: Na+/H+ antiporter NhaC; KEGG: sru:SRU_1137 Na+/H+ antiporter family. (574 aa)    
Predicted Functional Partners:
Swoo_3256
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_2699 transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.620
Swoo_3254
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1520 TonB-dependent receptor.
 
     0.554
Swoo_3252
N-acyl-D-amino-acid deacylase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cps:CPS_2691 amidohydrolase family protein.
 
     0.487
Swoo_3253
PFAM: peptidase M14 carboxypeptidase A; KEGG: cps:CPS_2692 zinc carboxypeptidase family protein.
 
     0.472
Swoo_1411
PFAM: sodium:neurotransmitter symporter; KEGG: pat:Patl_1994 sodium:neurotransmitter symporter.
 
     0.445
Swoo_3258
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pat:Patl_2790 mandelate racemase/muconate lactonizing enzyme-like.
       0.425
Swoo_3520
PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_3353 nucleoside recognition domain protein.
  
     0.423
Swoo_0460
PFAM: sodium:neurotransmitter symporter; KEGG: sse:Ssed_4156 sodium:neurotransmitter symporter.
 
     0.415
Swoo_3257
PFAM: protein of unknown function DUF1611; KEGG: pat:Patl_2789 protein of unknown function DUF1611.
       0.413
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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