Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3258PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pat:Patl_2790 mandelate racemase/muconate lactonizing enzyme-like. (355 aa)    
Predicted Functional Partners:
Swoo_3257
PFAM: protein of unknown function DUF1611; KEGG: pat:Patl_2789 protein of unknown function DUF1611.
 
  
  0.995
Swoo_2433
PFAM: Appr-1-p processing domain protein; KEGG: spl:Spea_2200 Appr-1-p processing domain protein.
   
   0.709
Swoo_3256
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_2699 transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.500
Swoo_4207
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
    0.486
Swoo_3228
KEGG: spl:Spea_2803 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
  
  
 0.431
Swoo_3255
PFAM: Na+/H+ antiporter NhaC; KEGG: sru:SRU_1137 Na+/H+ antiporter family.
       0.425
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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