STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3259KEGG: cps:CPS_2688 hypothetical protein. (710 aa)    
Predicted Functional Partners:
Swoo_0042
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_0039 microbial collagenase.
  
     0.654
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.653
Swoo_3449
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_3300 microbial collagenase.
  
     0.609
Swoo_1073
KEGG: cps:CPS_3074 cytochrome P460.
  
     0.562
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.562
Swoo_2076
PFAM: major facilitator superfamily MFS_1; KEGG: sbn:Sbal195_2468 major facilitator superfamily MFS_1.
  
     0.546
Swoo_2937
KEGG: cps:CPS_3046 hypothetical protein.
  
     0.520
Swoo_3000
KEGG: sse:Ssed_3543 hypothetical protein.
  
     0.498
Swoo_1859
PFAM: Forkhead-associated protein; KEGG: cps:CPS_0998 FHA domain protein.
  
     0.480
Swoo_0733
KEGG: sse:Ssed_3828 hypothetical protein.
  
     0.473
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.